Genomic breeding value prediction and QTL mapping of QTLMAS2010 data using Bayesian Methods
نویسندگان
چکیده
منابع مشابه
Genomic breeding value prediction and QTL mapping of QTLMAS2010 data using Bayesian Methods
BACKGROUND Bayesian methods allow prediction of genomic breeding values (GEBVs) using high-density single nucleotide polymorphisms (SNPs) covering the whole genome with effective shrinkage of SNP effects using appropriate priors. In this study we applied a modification of the well-known BayesA and BayesB methods to estimate the proportion of SNPs with zero effects (π) and a common variance for ...
متن کاملGenomic breeding value prediction and QTL mapping of QTLMAS2011 data using Bayesian and GBLUP methods
BACKGROUND The goal of this study was to apply Bayesian and GBLUP methods to predict genomic breeding values (GEBV), map QTL positions and explore the genetic architecture of the trait simulated for the 15th QTL-MAS workshop. METHODS Three methods with models considering dominance and epistasis inheritances were used to fit the data: (i) BayesB with a proportion π = 0.995 of SNPs assumed to h...
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Animal breeding faces one of the most significant changes of the past decades - the implementation of genomic selection. Genomic selection uses dense marker maps to predict the breeding value of animals with reported accuracies that are up to 0.31 higher than those of pedigree indexes, without the need to phenotype the animals themselves, or close relatives thereof. The basic principle is that ...
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BACKGROUND Bayesian approaches for predicting genomic breeding values (GEBV) have been proposed that allow for different variances for individual markers resulting in a shrinkage procedure that uses prior information to coerce negligible effects towards zero. These approaches have generally assumed application to high-density genotype data on all individuals, which may not be the case in practi...
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introduction genetic evaluation and estimation of breeding value are one of the most fundamental elements of breeding programmes for genetic improvement. recently, genomic selection has become an efficient method to approach this aim. the accuracy of estimated genomic breeding value is the most important factor in genomic selection. different studies have been performed addressing the factors a...
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ژورنال
عنوان ژورنال: BMC Proceedings
سال: 2011
ISSN: 1753-6561
DOI: 10.1186/1753-6561-5-s3-s13